{"id":4749,"date":"2022-10-24T08:32:57","date_gmt":"2022-10-24T06:32:57","guid":{"rendered":"https:\/\/cetaf.org\/dest\/?page_id=4749"},"modified":"2023-03-03T09:38:48","modified_gmt":"2023-03-03T08:38:48","slug":"integrative-taxonomy-in-the-big-data-era-3","status":"publish","type":"page","link":"https:\/\/cetaf.org\/dest\/integrative-taxonomy-in-the-big-data-era-3\/","title":{"rendered":"Integrative taxonomy in the Big Data Era"},"content":{"rendered":"

\"\"<\/p>\n

Description<\/strong><\/p>\n

The general objective of this course is to shed a modern light on the activity of species delimitation and description. More specifically, it is about showing how taxonomy integrates technical advances in molecular biology while recalling the function of natural history collections in these practices. The objectives of the course are thus to provide (i) a conceptual and methodological framework for taxonomy practices; (ii) tools for integrating data from molecular biology techniques into these practices and (iii) overview of the use of databases that link specimens deposited in natural history collections, biological data (particularly molecular) and biological nomenclature. The module is therefore aimed both at biologists who wonder about the place of taxonomy in modern biology and at taxonomists who wish to apply advanced techniques in biology in their practice. To achieve these objectives, the module alternates between lessons and practical work. The course is in English.<\/p>\n

Look at its daily program at:<\/p>\n

https:\/\/sites.google.com\/site\/coursbarcode\/accueil<\/a><\/p>\n

Trainers<\/strong><\/p>\n

Nicolas Puillandre – ISYEB – Institut de Syst\u00e9matique, Evolution, Biodiversit\u00e9, a joint research center (UMR 7205<\/em>) of\u00a0CNRS,<\/em>\u00a0in the National Museum of Natural History, Paris, FRANCE. https:\/\/isyeb.mnhn.fr\/fr\/annuaire\/nicolas-puillandre-2617<\/a><\/p>\n

Dates of Training period<\/strong><\/p>\n

March 27th to March 31st, 2023<\/p>\n

Duration<\/strong><\/p>\n

5 days, 8 hours per day<\/p>\n

Location<\/strong><\/p>\n

National Museum of Natural History, Entomology laboratory, 45 rue Buffon, 75005, Paris, FRANCE<\/p>\n

Course\u2019s language<\/strong><\/p>\n

English<\/p>\n

Target audience<\/strong><\/p>\n

PhD students, MSc students, researchers, technicians, curators\u2026<\/p>\n

Fee<\/strong><\/p>\n

There is no fee for Students<\/p>\n

There is a fee for non-students: 60\u20ac\/day if you pay personally; 120\u20ac\/day for public institutions; 240\u20ac\/day for private institutions.<\/p>\n

Registration deadline<\/strong><\/p>\n

15 February 2023<\/p>\n

Mode of trainees\u2019 assessment<\/strong><\/p>\n

The presence at the courses validates the ECTS.<\/p>\n

Participant quota (min and max number of trainees)<\/strong><\/p>\n

Min: 10.<\/p>\n

Max: 40<\/p>\n

External funding\/sponsoring<\/strong><\/p>\n

None<\/p>\n

Types of training\/ Implementation method<\/strong><\/p>\n

    \n
  1. Theoretical seminars\/lectures<\/li>\n
  2. Practical experience<\/li>\n<\/ol>\n

    Training Course<\/strong>\u00a0learning outcomes<\/strong><\/p>\n

      \n
    1. Concepts and methods of integrative taxonomy in the 21st century.<\/li>\n
    2. The magnitude of biodiversity: 2, 10 or 30 million species?<\/li>\n
    3. Introduction to international approaches and initiatives for species identification by DNA<\/li>\n
    4. DNA Barcoding and integrative taxonomy.<\/li>\n
    5. Evolutionary models in integrative taxonomy<\/li>\n
    6. Practical course: From raw data to preliminary analyses.<\/li>\n
    7. Methods of analyses of NGS data.<\/li>\n
    8. Practical course: Introduction to the analysis of NGS data<\/li>\n
    9. Species delimitation methods<\/li>\n
    10. A brief introduction to concepts and methods in phylogenomics.<\/li>\n
    11. Practical course: Species delimitation and phylogeny<\/li>\n
    12. Paradoxes and limits of the concepts and practices of integrative taxonomy<\/li>\n
    13. From Nagoya to nomenclature: the exploration of species stuck between law and codes?<\/li>\n
    14. Big data, exploration and scientific hypotheses.<\/li>\n<\/ol>\n

      Certifications provided<\/strong><\/p>\n

      The course corresponds to 7.5 ECTS<\/p>\n

      What trainees need to bring<\/strong><\/p>\n

      There is no need to bring a laptop. Students can bring their own dataset if they wish to use it during the practical work (e.g. COI alignment).<\/p>\n

      Registration<\/strong><\/p>\n

      For registration, please contact Nicolas Puillandre at: nicolas.puillandre@mnhn.fr<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

      Description The general objective of this course is to shed a modern light on the activity of species delimitation and description. More specifically, it is about showing how taxonomy integrates technical advances in molecular biology while recalling the function of natural history collections in these practices. 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